| mod ID | m6A_site_64280 | mod Site | chr1:170726638-170726639:+ | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
ATCTCCTCTTGGACTCAGGAACTCTTGCAAAGGTTTCAAAG |
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| Motif Score | 3.37338095238095 | ||||||||||||||||||||||||||||||
| RNA Structure Motif |
.(((((....)))))................ |
MFE | -3.60 | ||||||||||||||||||||||||||||
| Support Dataset Num | 4 | Support sub-Dataset Num | 8 | ||||||||||||||||||||||||||||
| Support Dataset List | |||||||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM3396437, GSM3396438, GSM1339405, GSM2417479, GSM2460352, GSM2460354, GSM2754220, GSM2754244 |
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| Cell/Tissue List |
HEK293T, fibroblasts, HEK293A-TOA, MSC |
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| Seq Type List | MeRIP-seq,m6A-seq | ||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000239461.11,ENST00000476867.6,ENST00000367760.7,ENST00000495280.5,ENST00000497230.2 | ||||||||||||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | na | ||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | ||||||||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | ||||||||||||||||||||||||||||
| Writer Catalysis Detail | na | ||||||||||||||||||||||||||||||
| PubMed ID | 24981863, 28525753, 29109479 |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1