Details of RNA Modification Site of hg38
mod ID m6A_site_643945 mod Site chr4:87982618-87982619:+
mod Type m6A Sequence TTGGGACAGCCGTGGGAAGGACAGTTATGAAACGAGTCAGC
Motif Score 3.64304761904762
RNA Structure Motif ....((.......))................
 MFE -0.90
Support Dataset Num 17 Support sub-Dataset Num 55
Support Dataset List
Support sub-Dataset List

GSM2987447, GSM2987448, GSM2987449, GSM3582052, GSM3582053, GSM3582054, GSE129842, GSM1166141, GSM1272358, GSM1272360, GSM1272364, GSM1272366, GSM1272368, GSM1339395, GSM1339405, GSM1339407, GSM1339425, GSM1339427, GSM1339429, GSM1339439, GSM1828596, GSM1908208, GSM1982257, GSM2010454, GSM2203056, GSM2203060, GSM2283214, GSM2283215, GSM2324304, GSM2324306, GSM2324310, GSM2332975, GSM2460345, GSM2460347, GSM2460348, GSM2460350, GSM2460354, GSM2754211, GSM2754213, GSM2754214, GSM2754216, GSM2754235, GSM2754237, GSM2754238, GSM2754240, GSM2464905, GSM2464909, GSM2464911, GSM2464913, GSM2464915, GSM2464919, GSM2464921, GSM2464927, GSM2464931, GSM2564019
Cell/Tissue List

HepG2, A549, hESC-HEK293T, U2OS, H1A, H1B, hESCs, fibroblasts, MT4, MM6, Huh7, CD4T, peripheral-blood, GSC-11, iSLK, MSC, endometrial, HEC-1-A, NB4
Seq Type List m6A-seq,MeRIP-seq,MAZTER-seq,m6A-CLIP/IP
Transcript ID List ENST00000360804.4,ENST00000395080.8,ENST00000237623.11,ENST00000614857.4,ENST00000509659.5,ENST00000508233.5
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000360804.4ENSG00000118785.14SPP1protein_codingcds-6
ENST00000395080.8ENSG00000118785.14SPP1protein_codingcds-7
ENST00000237623.11ENSG00000118785.14SPP1protein_codingcds-6
ENST00000614857.4ENSG00000118785.14SPP1protein_codingcds-8
ENST00000509659.5ENSG00000118785.14SPP1processed_transcriptexon-8
ENST00000508233.5ENSG00000118785.14SPP1protein_codingcds-5
Conserved Sites susScr11:m6A_site_132389
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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