| mod ID | m6A_site_646447 | mod Site | chr4:105236356-105236357:+ | |||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
ACTCATAATGTCCAAATGGGACTGGAGGAAGTACAGAATAT |
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| Motif Score | 4.06504166666667 | |||||||||||||||||||||||||||||||||||
| RNA Structure Motif |
....((((.....)))).............. |
MFE | -4.80 | |||||||||||||||||||||||||||||||||
| Support Dataset Num | 13 | Support sub-Dataset Num | 36 | |||||||||||||||||||||||||||||||||
| Support Dataset List | ||||||||||||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM2739502, GSM2739503, GSM2739507, GSM2884195, GSM2884197, GSM2884199, GSM3396437, GSM3396438, GSM928399, GSM928401, GSM908337, GSM1135033, GSM1166139, GSM1339403, GSM1339405, GSM1339427, GSM1594131, GSM1723347, GSM1828594, GSM2203047, GSM2203052, GSM2203056, GSM2203060, GSM2460345, GSM2460347, GSM2460348, GSM2460350, GSM2460352, GSM2460354, GSM2460356, GSM2460358, GSM2754222, GSM2754224, GSM2754235, GSM2754237, GSM2754248 |
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| Cell/Tissue List |
HeLa, CD34, HEK293T, HepG2, U2OS, fibroblasts, A549, GM12878, LCLs, CD8T, Huh7, iSLK, MSC, TIME |
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| Seq Type List | m6A-seq,MeRIP-seq,m6A-CLIP/IP | |||||||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000540549.5,ENST00000305737.6,ENST00000513237.5,ENST00000380013.8,ENST00000265149.9,ENST00000413648.2 | |||||||||||||||||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | panTro5:m6A_site_50602 | |||||||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | |||||||||||||||||||||||||||||||||
| Writer Catalysis Detail | na | |||||||||||||||||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1