| mod ID | m6A_site_6486 | mod Site | chr1:10399530-10399531:+ | |||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
AGGCGCGGAGGAAAGTGCAGACTCCCAGTCACGGCCAAATG |
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| Motif Score | 3.31938095238095 | |||||||||||||||||||||||||||||||||||
| RNA Structure Motif |
.((((...........))))........... |
MFE | -4.80 | |||||||||||||||||||||||||||||||||
| Support Dataset Num | 4 | Support sub-Dataset Num | 15 | |||||||||||||||||||||||||||||||||
| Support Dataset List | ||||||||||||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM2739506, GSM2739507, GSM2739523, GSM2739534, GSM2991403, GSM908337, GSM1339427, GSM1339429, GSM2460352, GSM2460356, GSM2460358, GSM2754213, GSM2754222, GSM2754224, GSM2754248 |
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| Cell/Tissue List | HeLa, HepG2, A549, MSC, TIME, iSLK | |||||||||||||||||||||||||||||||||||
| Seq Type List | m6A-seq,MeRIP-seq | |||||||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000491493.5,ENST00000477958.5,ENST00000465632.5,ENST00000487775.1,ENST00000483936.5,ENST00000270776.13 | |||||||||||||||||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | na | |||||||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | |||||||||||||||||||||||||||||||||
| Writer Catalysis Detail | na | |||||||||||||||||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
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School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1