Details of RNA Modification Site of hg38
mod ID m6A_site_6514 mod Site chr1:10413205-10413206:+
mod Type m6A Sequence AGAAGGGCACAGGGAAGTGGACCGCCATCTCCGCCCTGGAA
Motif Score 3.62240476190476
RNA Structure Motif (((....(((.((((....)))).)))))).
 MFE -10.20
Support Dataset Num 3 Support sub-Dataset Num 6
Support Dataset List GSE107954, GSE37002, GSE83438
Support sub-Dataset List

GSM2884195, GSM2884197, GSM2884199, GSM908331, GSM2203051, GSM2203056
Cell/Tissue List CD34, HepG2, Huh7
Seq Type List m6A-seq,MeRIP-seq
Transcript ID List ENST00000460189.1,ENST00000483936.5,ENST00000270776.13,ENST00000493288.1
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000460189.1ENSG00000142657.21PGDprotein_codingcds-6
ENST00000483936.5ENSG00000142657.21PGDprotein_codingcds-4
ENST00000270776.13ENSG00000142657.21PGDprotein_codingcds-8
ENST00000493288.1ENSG00000142657.21PGDretained_intronexon-1
Conserved Sites mm10:m6A_site_444718
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 30065315, 22575960, 27773535

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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