| mod ID | m6A_site_654239 | mod Site | chr4:152322116-152322117:- | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
TTGTCCCAACCCTGTACTGTACTCCCAGTGGCCAAACTTAT |
||||||||||||||||||||||||||||
| Motif Score | 3.27813690476191 | ||||||||||||||||||||||||||||||
| RNA Structure Motif |
.........(((((......)))))...... |
MFE | -3.30 | ||||||||||||||||||||||||||||
| Support Dataset Num | 1 | Support sub-Dataset Num | 2 | ||||||||||||||||||||||||||||
| Support Dataset List | GSE125780 | ||||||||||||||||||||||||||||||
| Support sub-Dataset List | GSM4024125, GSM4024128 | ||||||||||||||||||||||||||||||
| Cell/Tissue List | HEK293T | ||||||||||||||||||||||||||||||
| Seq Type List | DART-seq | ||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000603548.6,ENST00000263981.9,ENST00000281708.10,ENST00000393956.9,ENST00000296555.11 | ||||||||||||||||||||||||||||||
| Transcript Detail |
|
||||||||||||||||||||||||||||||
| Conserved Sites | na | ||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | ||||||||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | ||||||||||||||||||||||||||||
| Writer Catalysis Detail | na | ||||||||||||||||||||||||||||||
| PubMed ID | 31548708 |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
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Sun Yat-sen University, China.
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