Details of RNA Modification Site of hg38
mod ID m6A_site_654819 mod Site chr4:153704128-153704129:+
mod Type m6A Sequence CATTGGAAAAAACCGGAGAGACTTTGCTCACTCTGAAAAAC
Motif Score 3.31938095238095
RNA Structure Motif ........(((((.((......)).))))).
 MFE -5.80
Support Dataset Num 4 Support sub-Dataset Num 8
Support Dataset List
Support sub-Dataset List

GSM2884195, GSM2884197, GSM2884199, GSM1828594, GSM2010454, GSM2010456, GSM2460352, GSM2460354
Cell/Tissue List CD34, CD8T, MM6, MSC
Seq Type List m6A-seq,m6A-CLIP/IP,MeRIP-seq
Transcript ID List ENST00000642700.1,ENST00000643087.1,ENST00000644308.1,ENST00000260010.6,ENST00000642580.1
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000642700.1ENSG00000137462.7TLR2protein_codingcds-3
ENST00000643087.1ENSG00000137462.7TLR2protein_codingintron-1
ENST00000644308.1ENSG00000137462.7TLR2protein_codingcds-3
ENST00000260010.6ENSG00000137462.7TLR2protein_codingcds-1
ENST00000642580.1ENSG00000137462.7TLR2protein_codingcds-3
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

♥ Click the "Show Detail" button to show detailed list and click again to hide it.

© 2023, Qu Lab. School of Life Science, Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1