Details of RNA Modification Site of hg38
mod ID m6A_site_654979 mod Site chr4:154585650-154585651:-
mod Type m6A Sequence CACGAGTTACAACAGAGGAGACTCCACATTTGAAAGCAAGA
Motif Score 3.31938095238095
RNA Structure Motif .........(((....)))............
 MFE -2.40
Support Dataset Num 2 Support sub-Dataset Num 5
Support Dataset List GSE55572, GSE83438
Support sub-Dataset List

GSM1339425, GSM1339439, GSM2203060, GSM2203063, GSM2203064
Cell/Tissue List A549, Huh7
Seq Type List m6A-seq,MeRIP-seq
Transcript ID List ENST00000622532.1,ENST00000302053.7,ENST00000651975.1,ENST00000403106.8
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000622532.1ENSG00000171560.15FGAprotein_codingcds-6
ENST00000302053.7ENSG00000171560.15FGAprotein_codingcds-5
ENST00000651975.1ENSG00000171560.15FGAprotein_codingcds-5
ENST00000403106.8ENSG00000171560.15FGAprotein_codingcds-5
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 24981863, 27773535

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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