Details of RNA Modification Site of hg38
mod ID m6A_site_670425 mod Site chr5:65518410-65518411:-
mod Type m6A Sequence AAGGATATTGGAACCACAGGACTATTTGGATAAAAAACATT
Motif Score 4.06504166666667
RNA Structure Motif ((((.(((((...))....))).))))....
 MFE -0.70
Support Dataset Num 2 Support sub-Dataset Num 6
Support Dataset List GSE55572, GSE71154
Support sub-Dataset List

GSM1339393, GSM1339425, GSM1339427, GSM1339439, GSM1828594, GSM1828596
Cell/Tissue List hNPCs, A549, CD8T
Seq Type List m6A-seq,m6A-CLIP/IP
Transcript ID List ENST00000242872.7,ENST00000508421.5,ENST00000396679.6,ENST00000514814.5,ENST00000510693.5
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000242872.7ENSG00000123219.13CENPKprotein_codingutr3-9
ENST00000508421.5ENSG00000123219.13CENPKprotein_codingutr3-11
ENST00000396679.6ENSG00000123219.13CENPKprotein_codingutr3-11
ENST00000514814.5ENSG00000123219.13CENPKprotein_codingutr3-11
ENST00000510693.5ENSG00000123219.13CENPKprotein_codingutr3-10
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 24981863, 26404942

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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