Details of RNA Modification Site of hg38
mod ID m6A_site_681994 mod Site chr5:126592715-126592716:-
mod Type m6A Sequence AATTTAGGCCAGTGTGGCAGACTATGAAGAAACTGTAAAGA
Motif Score 3.31938095238095
RNA Structure Motif ..((((...))))..................
 MFE -4.30
Support Dataset Num 4 Support sub-Dataset Num 4
Support Dataset List
Support sub-Dataset List

GSM2991416, GSM2987449, GSM3582054, GSM2464931
Cell/Tissue List HeLa, HepG2, A549, HEC-1-A
Seq Type List m6A-seq,MeRIP-seq
Transcript ID List ENST00000503281.6,ENST00000637782.1,ENST00000409134.8,ENST00000637272.1,ENST00000509270.2,ENST00000553117.5,ENST00000510111.6,ENST00000637964.1,ENST00000636808.1,ENST00000636743.1,ENST00000636886.1,ENST00000636879.1,ENST00000635851.1,ENST00000479989.6,ENST00000636190.1,ENST00000458249.6,ENST00000413020.6,ENST00000635858.1,ENST00000509459.6,ENST00000638008.1,ENST00000511266.6,ENST00000635933.1,ENST00000412186.2,ENST00000636872.1,ENST00000636062.1,ENST00000637206.1,ENST00000636225.1
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000503281.6ENSG00000164904.18ALDH7A1nonsense_mediated_decayintron-1
ENST00000637782.1ENSG00000164904.18ALDH7A1protein_codingcds-3
ENST00000409134.8ENSG00000164904.18ALDH7A1protein_codingcds-3
ENST00000637272.1ENSG00000164904.18ALDH7A1protein_codingcds-3
ENST00000509270.2ENSG00000164904.18ALDH7A1protein_codingintron-2
ENST00000553117.5ENSG00000164904.18ALDH7A1protein_codingcds-3
ENST00000510111.6ENSG00000164904.18ALDH7A1protein_codingcds-3
ENST00000637964.1ENSG00000164904.18ALDH7A1protein_codingcds-2
ENST00000636808.1ENSG00000164904.18ALDH7A1nonsense_mediated_decayutr3-3
ENST00000636743.1ENSG00000164904.18ALDH7A1protein_codingintron-1
ENST00000636886.1ENSG00000164904.18ALDH7A1protein_codingintron-1
ENST00000636879.1ENSG00000164904.18ALDH7A1protein_codingcds-3
ENST00000635851.1ENSG00000164904.18ALDH7A1protein_codingcds-3
ENST00000479989.6ENSG00000164904.18ALDH7A1retained_intronexon-3
ENST00000636190.1ENSG00000164904.18ALDH7A1retained_intronexon-3
ENST00000458249.6ENSG00000164904.18ALDH7A1nonsense_mediated_decayutr3-4
ENST00000413020.6ENSG00000164904.18ALDH7A1protein_codingcds-3
ENST00000635858.1ENSG00000164904.18ALDH7A1retained_intronexon-3
ENST00000509459.6ENSG00000164904.18ALDH7A1nonsense_mediated_decayintron-1
ENST00000638008.1ENSG00000164904.18ALDH7A1nonsense_mediated_decayutr3-3
ENST00000511266.6ENSG00000164904.18ALDH7A1retained_intronexon-2
ENST00000635933.1ENSG00000164904.18ALDH7A1processed_transcriptexon-3
ENST00000412186.2ENSG00000164904.18ALDH7A1nonsense_mediated_decaycds-3
ENST00000636872.1ENSG00000164904.18ALDH7A1nonsense_mediated_decayutr3-4
ENST00000636062.1ENSG00000164904.18ALDH7A1retained_intronexon-3
ENST00000637206.1ENSG00000164904.18ALDH7A1protein_codingcds-3
ENST00000636225.1ENSG00000164904.18ALDH7A1nonsense_mediated_decayutr3-3
Conserved Sites mm10:m6A_site_293517
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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