Details of RNA Modification Site of hg38
mod ID m6A_site_683148 mod Site chr5:132075976-132075977:+
mod Type m6A Sequence CCATGGTGGGAGTGGCCTGGACCTGCCCTGGGCCACACTGA
Motif Score 3.62240476190476
RNA Structure Motif ......(((((((((.......)))))))))
MFE -13.90
Support Dataset Num 3 Support sub-Dataset Num 5
Support Dataset List GSE125803GSE55572GSE85724
Support sub-Dataset List

GSM3582052, GSM3582053, GSM1339405, GSM2283214, GSM2283215
Cell/Tissue List A549, fibroblasts, CD4T
Seq Type List MeRIP-seq,m6A-seq
Transcript ID List ENST00000296871.4
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000296871.4ENSG00000164400.6CSF2protein_codingutr3-4
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 315979132498186327371828

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

♥ Click the "Show Detail" button to show detailed list and click again to hide it.


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