| mod ID | m6A_site_684555 | mod Site | chr5:134197100-134197101:- | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
TTTTCATAATAAACTTGTGAACTAAGAACTGAGAAGGTCAA |
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| Motif Score | 3.37338095238095 | |||||||||||||||
| RNA Structure Motif |
............................... |
MFE | 0.00 | |||||||||||||
| Support Dataset Num | 8 | Support sub-Dataset Num | 17 | |||||||||||||
| Support Dataset List | ||||||||||||||||
| Support sub-Dataset List |
GSM2739507, GSM2991403, GSM2991416, GSM4024125, GSM4024128, GSM928399, GSM1135033, GSM1339393, GSM1339395, GSM1339405, GSM1339407, GSM1594131, GSM2203060, GSM2203063, GSM2203064, GSM2460345, GSM2460347 |
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| Cell/Tissue List |
HeLa, HEK293T, hNPCs, hESCs, fibroblasts, GM12878, Huh7, iSLK |
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| Seq Type List | m6A-seq,DART-seq,MeRIP-seq | |||||||||||||||
| Transcript ID List | ENST00000481195.6,ENST00000519718.1 | |||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | na | |||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||
| writer Num | 0 | Writer Name List | na | |||||||||||||
| Writer Catalysis Detail | na | |||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1