Details of RNA Modification Site of hg38
mod ID m6A_site_687403 mod Site chr5:139478414-139478415:-
mod Type m6A Sequence GTATATTCTCCTCCCATTGGACTGTGGGGTGCCTGATAACC
Motif Score 4.06504166666667
RNA Structure Motif ......((((((......)))))).......
 MFE -7.40
Support Dataset Num 4 Support sub-Dataset Num 4
Support Dataset List
Support sub-Dataset List

GSM2991416, GSM2010454, GSM2464931, GSM2602070
Cell/Tissue List HeLa, MM6, HEC-1-A, AML
Seq Type List m6A-seq,miCLIP
Transcript ID List ENST00000509573.5,ENST00000650883.1,ENST00000511886.6,ENST00000330794.9,ENST00000507297.5,ENST00000652640.1,ENST00000651699.1,ENST00000652110.1,ENST00000502362.2,ENST00000514119.6,ENST00000512606.6,ENST00000651565.1,ENST00000652293.1,ENST00000652271.1,ENST00000515507.5,ENST00000503287.5,ENST00000652543.1,ENST00000502825.1,ENST00000510817.2
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000509573.5ENSG00000184584.13TMEM173retained_intronexon-3
ENST00000650883.1ENSG00000184584.13TMEM173nonsense_mediated_decayutr3-7
ENST00000511886.6ENSG00000184584.13TMEM173retained_intronexon-4
ENST00000330794.9ENSG00000184584.13TMEM173protein_codingcds-6
ENST00000507297.5ENSG00000184584.13TMEM173retained_intronexon-4
ENST00000652640.1ENSG00000184584.13TMEM173retained_intronexon-1
ENST00000651699.1ENSG00000184584.13TMEM173protein_codingcds-5
ENST00000652110.1ENSG00000184584.13TMEM173protein_codingcds-5
ENST00000502362.2ENSG00000184584.13TMEM173retained_intronexon-3
ENST00000514119.6ENSG00000184584.13TMEM173retained_intronexon-4
ENST00000512606.6ENSG00000184584.13TMEM173retained_intronexon-4
ENST00000651565.1ENSG00000184584.13TMEM173protein_codingcds-5
ENST00000652293.1ENSG00000184584.13TMEM173retained_intronexon-1
ENST00000652271.1ENSG00000184584.13TMEM173protein_codingcds-4
ENST00000515507.5ENSG00000184584.13TMEM173processed_transcriptexon-5
ENST00000503287.5ENSG00000184584.13TMEM173retained_intronexon-3
ENST00000652543.1ENSG00000184584.13TMEM173protein_codingcds-5
ENST00000502825.1ENSG00000184584.13TMEM173retained_intronexon-2
ENST00000510817.2ENSG00000184584.13TMEM173protein_codingcds-4
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

♥ Click the "Show Detail" button to show detailed list and click again to hide it.

© 2023, Qu Lab. School of Life Science, Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1