| mod ID | m6A_site_691077 | mod Site | chr5:143222693-143222694:+ | ||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
ATTTGATAACTAAGAGGAAGACTTGCAAAGCCGTTTTCTCA |
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| Motif Score | 3.31938095238095 | ||||||||||||||||||||||||||||||||||||||||
| RNA Structure Motif |
........(((.....)))............ |
MFE | -0.20 | ||||||||||||||||||||||||||||||||||||||
| Support Dataset Num | 15 | Support sub-Dataset Num | 42 | ||||||||||||||||||||||||||||||||||||||
| Support Dataset List | |||||||||||||||||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM2739503, GSM2991403, GSM2884195, GSM2987449, GSM3396437, GSM3396438, GSM3582052, GSM3582053, GSM3582054, GSM928399, GSM1339395, GSM1339401, GSM1339403, GSM1339425, GSM1339427, GSM1339429, GSM1339439, GSM1594131, GSM2010454, GSM2010456, GSM2203043, GSM2203047, GSM2203056, GSM2203060, GSM2324298, GSM2324304, GSM2324308, GSM2324310, GSM2332975, GSM2460345, GSM2460347, GSM2460352, GSM2460356, GSM2754222, GSM2754240, GSM2464905, GSM2464909, GSM2464911, GSM2464913, GSM2464931, GSM2564019, GSM2564022 |
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| Cell/Tissue List |
HeLa, CD34, HepG2, HEK293T, A549, hESCs, fibroblasts, GM12878, MM6, Huh7, peripheral-blood, GSC-11, iSLK, MSC, TIME, endometrial, HEC-1-A, NB4 |
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| Seq Type List | m6A-seq,MeRIP-seq | ||||||||||||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000418236.5,ENST00000486650.1,ENST00000642734.1,ENST00000645722.2,ENST00000378004.8,ENST00000443674.5,ENST00000274498.9 | ||||||||||||||||||||||||||||||||||||||||
| Transcript Detail |
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| Conserved Sites | na | ||||||||||||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||||||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | ||||||||||||||||||||||||||||||||||||||||
| writer Num | 1 | Writer Name List | RBM15 | ||||||||||||||||||||||||||||||||||||||
| Writer Catalysis Detail |
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| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1