Details of RNA Modification Site of hg38
mod ID m6A_site_691102 mod Site chr5:143225072-143225073:+
mod Type m6A Sequence TTAGATCTGTGAACCTGAGGACAAGAAGACCTTGGGAAATG
Motif Score 3.64304761904762
RNA Structure Motif ........(((((((.(.....).)))))))
 MFE -7.30
Support Dataset Num 3 Support sub-Dataset Num 5
Support Dataset List GSE83438, GSE87190, GSE93911
Support sub-Dataset List

GSM2203060, GSM2324304, GSM2464905, GSM2464911, GSM2464913
Cell/Tissue List

Huh7, peripheral-blood, endometrial
Seq Type List MeRIP-seq,m6A-seq
Transcript ID List ENST00000486650.1,ENST00000378004.8,ENST00000274498.9,ENST00000645722.2
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000486650.1ENSG00000145819.17ARHGAP26processed_transcriptexon-3
ENST00000378004.8ENSG00000145819.17ARHGAP26protein_codingutr3-23
ENST00000274498.9ENSG00000145819.17ARHGAP26protein_codingutr3-23
ENST00000645722.2ENSG00000145819.17ARHGAP26protein_codingutr3-23
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 27773535, 29249359, 30154548

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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