| mod ID | m6A_site_693974 | mod Site | chr5:151029970-151029971:- | ||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
GCTATTTGCACGAATCATGGACATAAATCCAAGTTGAAGAA |
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| Motif Score | 3.64304761904762 | ||||||||||||||||||||||||||||||||||||||||
| RNA Structure Motif |
............((((......))))..... |
MFE | -2.80 | ||||||||||||||||||||||||||||||||||||||
| Support Dataset Num | 17 | Support sub-Dataset Num | 22 | ||||||||||||||||||||||||||||||||||||||
| Support Dataset List | |||||||||||||||||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM2739507, GSM2991403, GSM3396438, GSE125240, GSM3582053, GSM3582054, GSE129842, GSM928399, GSM1339405, GSM1339429, GSM1339439, GSM1723349, GSM1828594, GSM1982257, GSM2010454, GSM2010456, GSM2203060, GSM2324298, GSM2754220, GSM2464921, GSM2564019, GSM2602070 |
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| Cell/Tissue List |
HeLa, HEK293T, kidney, A549, hESC-HEK293T, fibroblasts, LCLs, CD8T, MM6, Huh7, peripheral-blood, MSC, endometrial, NB4, AML |
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| Seq Type List | m6A-seq,MeRIP-seq,m6A-REF-seq,MAZTER-seq,m6A-CLIP/IP,miCLIP | ||||||||||||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000610874.4,ENST00000523338.5,ENST00000389378.6,ENST00000517504.5,ENST00000610535.5,ENST00000315050.11,ENST00000520931.5 | ||||||||||||||||||||||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | mm10:m6A_site_88470;panTro5:m6A_site_54089 | ||||||||||||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||||||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | ||||||||||||||||||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | ||||||||||||||||||||||||||||||||||||||
| Writer Catalysis Detail | na | ||||||||||||||||||||||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1