Details of RNA Modification Site of hg38
mod ID m6A_site_702540 mod Site chr5:181200084-181200085:-
mod Type m6A Sequence CTCCAACTTCTCCTCCTGGGACAGAAACAGATGGCAGCGGA
Motif Score 3.64304761904762
RNA Structure Motif ......((..(((.........)))..))..
 MFE -3.80
Support Dataset Num 2 Support sub-Dataset Num 10
Support Dataset List GSE102493, GSE112795
Support sub-Dataset List

GSM2739506, GSM2739507, GSM2739522, GSM2739523, GSM2739534, GSM2739535, GSM2991403, GSM3083805, GSM3083806, GSM3083810
Cell/Tissue List HeLa
Seq Type List m6A-seq
Transcript ID List ENST00000274773.12,ENST00000393319.7,ENST00000393315.5,ENST00000422067.2
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000274773.12ENSG00000146054.18TRIM7protein_codingintron-2
ENST00000393319.7ENSG00000146054.18TRIM7protein_codingcds-1
ENST00000393315.5ENSG00000146054.18TRIM7protein_codingintron-2
ENST00000422067.2ENSG00000146054.18TRIM7protein_codingintron-2
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 29507755, 31061416

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

♥ Click the "Show Detail" button to show detailed list and click again to hide it.

© 2023, Qu Lab. School of Life Science, Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1