RMBase v3.0: Decipher the Landscape, Mechanism and Function of RNA Modifications by Integrating Multi-dimensional High-throughput Sequencing Data.

Details of RNA Modification Site of hg38

mod ID

m6A_site_705663

mod Site

chr6:8652379-8652380:+

mod Type

m6A

Sequence

TGGACATTTCAACCTCCAGAACTGTGATCCAGTAAGTGTTG

Motif Score

3.37338095238095

RNA Structure Motif

...............((((.....))))...

MFE

-2.20

Support Dataset Num

Support sub-Dataset Num

Support Dataset List

GSE83438

Support sub-Dataset List

GSM2203043, GSM2203044, GSM2203051, GSM2203056

Cell/Tissue List

Huh7

Seq Type List

MeRIP-seq

Transcript ID List

ENST00000642622.1,ENST00000644441.1,ENST00000647039.1,ENST00000646749.1,ENST00000642340.1,ENST00000643036.1,ENST00000646431.1,ENST00000646868.1,ENST00000644363.1,ENST00000645970.1,ENST00000645379.1,ENST00000647365.1,ENST00000646377.1,ENST00000642163.1,ENST00000645976.1,ENST00000643571.1,ENST00000646295.1,ENST00000645017.1,ENST00000645758.1,ENST00000645863.1,ENST00000503668.2,ENST00000646706.1,ENST00000646981.1,ENST00000643545.1,ENST00000643889.1,ENST00000644718.1,ENST00000644837.1,ENST00000642168.1,ENST00000646741.1,ENST00000646231.1,ENST00000643431.1,ENST00000647306.1,rmsk_1864728,ENST00000643473.1,ENST00000645750.1,ENST00000644111.1,ENST00000644610.1,ENST00000645365.1,ENST00000642357.1,ENST00000643126.1,ENST00000644800.1,ENST00000646876.1,ENST00000643058.1,ENST00000646996.1,ENST00000645321.1,ENST00000642345.1,ENST00000646007.1,ENST00000643953.1,ENST00000642760.1,ENST00000642534.1,ENST00000646490.1,ENST00000647135.1,ENST00000647052.1,ENST00000643985.1,ENST00000646774.1,ENST00000644892.1,ENST00000646758.1,ENST00000646718.1,ENST00000643788.1,ENST00000646403.1,ENST00000642665.1,ENST00000644654.1,ENST00000645474.1,ENST00000645344.1,ENST00000646073.1,ENST00000645047.1,ENST00000643311.1,ENST00000642798.1,ENST00000647466.1,ENST00000645925.1,ENST00000643414.1,ENST00000644605.1,ENST00000643083.1,ENST00000645087.1,ENST00000644248.1,ENST00000643259.1,ENST00000645322.1,ENST00000645464.1,ENST00000646792.1,ENST00000646043.1,ENST00000643136.1,ENST00000643415.1,ENST00000645747.1,ENST00000642458.1

Transcript Detail

Transcript ID	Gene ID	Gene Name	Gene Type	Region
ENST00000642622.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-2
ENST00000644441.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-3
ENST00000647039.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-3
ENST00000646749.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-4
ENST00000642340.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-3
ENST00000643036.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-3
ENST00000646431.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-2
ENST00000646868.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-1
ENST00000644363.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-3
ENST00000645970.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-4
ENST00000645379.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-3
ENST00000647365.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-2
ENST00000646377.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-4
ENST00000642163.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-4
ENST00000645976.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-3
ENST00000643571.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-3
ENST00000646295.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-3
ENST00000645017.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-4
ENST00000645758.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-3
ENST00000645863.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-3
ENST00000503668.2	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	exon-1
ENST00000646706.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-2
ENST00000646981.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	exon-3
ENST00000643545.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-3
ENST00000643889.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-3
ENST00000644718.1	ENSG00000285216.1	AL355499.2	bidirectional_promoter_lncRNA	intron-7
ENST00000644837.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-3
ENST00000642168.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-4
ENST00000646741.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	exon-1
ENST00000646231.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-2
ENST00000643431.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-3
ENST00000647306.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-3
rmsk_1864728	rmsk_1864728	MLT1A	ERVL-MaLR	exon
ENST00000643473.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-3
ENST00000645750.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-2
ENST00000644111.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-2
ENST00000644610.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-4
ENST00000645365.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-3
ENST00000642357.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-3
ENST00000643126.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-4
ENST00000644800.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-3
ENST00000646876.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-3
ENST00000643058.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-3
ENST00000646996.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-4
ENST00000645321.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-2
ENST00000642345.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-3
ENST00000646007.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-3
ENST00000643953.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-2
ENST00000642760.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-2
ENST00000642534.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-2
ENST00000646490.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-3
ENST00000647135.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-2
ENST00000647052.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-3
ENST00000643985.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-3
ENST00000646774.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-4
ENST00000644892.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-3
ENST00000646758.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	exon-3
ENST00000646718.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-2
ENST00000643788.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-2
ENST00000646403.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-2
ENST00000642665.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-2
ENST00000644654.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-4
ENST00000645474.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-3
ENST00000645344.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-2
ENST00000646073.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-2
ENST00000645047.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-2
ENST00000643311.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-2
ENST00000642798.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-2
ENST00000647466.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-3
ENST00000645925.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-3
ENST00000643414.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-4
ENST00000644605.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-3
ENST00000643083.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-3
ENST00000645087.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-2
ENST00000644248.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-3
ENST00000643259.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-4
ENST00000645322.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-1
ENST00000645464.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-3
ENST00000646792.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-2
ENST00000646043.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	exon-3
ENST00000643136.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-2
ENST00000643415.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-4
ENST00000645747.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-3
ENST00000642458.1	ENSG00000285219.1	AL591485.1	bidirectional_promoter_lncRNA	intron-2

Conserved Sites

snoRNA Num

snoRNA Guide Site

snoRNA Guide Detail

writer Num

Writer Name List

Writer Catalysis Detail

PubMed ID

27773535

Discription & Help

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

♥ Click the "Show Detail" button to show detailed list and click again to hide it.