Details of RNA Modification Site of hg38
mod ID m6A_site_714736 mod Site chr6:36130920-36130921:+
mod Type m6A Sequence ACTGGGCCTGGTTCTCCAGGACTGTACACTTGCAAGACCCC
Motif Score 4.06504166666667
RNA Structure Motif .(((((....)))))..((((....))))..
 MFE -8.80
Support Dataset Num 2 Support sub-Dataset Num 4
Support Dataset List GSE110320, GSE93911
Support sub-Dataset List

GSM2987449, GSM2464905, GSM2464911, GSM2464913
Cell/Tissue List HepG2, endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000373766.9,ENST00000490334.1,ENST00000373759.1,ENST00000476951.5,ENST00000211287.9
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000373766.9ENSG00000156711.17MAPK13protein_codingintron-1
ENST00000490334.1ENSG00000156711.17MAPK13processed_transcriptexon-1
ENST00000373759.1ENSG00000156711.17MAPK13protein_codingintron-1
ENST00000476951.5ENSG00000156711.17MAPK13processed_transcriptintron-2
ENST00000211287.9ENSG00000156711.17MAPK13protein_codingintron-1
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 3086759, 30154548

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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