Details of RNA Modification Site of hg38
mod ID m6A_site_714740 mod Site chr6:36136517-36136518:+
mod Type m6A Sequence CAACCTGGCTGTGAATGAGGACTGTGAACTGAAGGTGAGTG
Motif Score 4.06504166666667
RNA Structure Motif (.((.((........)).)).).........
 MFE -1.30
Support Dataset Num 2 Support sub-Dataset Num 6
Support Dataset List GSE110320, GSE93911
Support sub-Dataset List

GSM2987447, GSM2464905, GSM2464907, GSM2464909, GSM2464911, GSM2464913
Cell/Tissue List HepG2, endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000373759.1,ENST00000373766.9,ENST00000211287.9
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000373759.1ENSG00000156711.17MAPK13protein_codingcds-6
ENST00000373766.9ENSG00000156711.17MAPK13protein_codingcds-6
ENST00000211287.9ENSG00000156711.17MAPK13protein_codingcds-6
Conserved Sites mm10:m6A_site_259918
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 3086759, 30154548

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

♥ Click the "Show Detail" button to show detailed list and click again to hide it.

© 2023, Qu Lab. School of Life Science, Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1