Details of RNA Modification Site of hg38
mod ID m6A_site_716267 mod Site chr6:41089619-41089620:+
mod Type m6A Sequence CAGATCCAGATCCAGGGTGGACAGGCTGTGCAGGTGCAGGG
Motif Score 3.64304761904762
RNA Structure Motif ....(((((.(((......))).))..))).
 MFE -3.90
Support Dataset Num 6 Support sub-Dataset Num 11
Support Dataset List
Support sub-Dataset List

GSM2987447, GSM2203056, GSM2283215, GSM2332985, GSM2332986, GSM2332987, GSM2332988, GSM2332989, GSM2332990, GSM2464911, GSM2564019
Cell/Tissue List

HepG2, Huh7, CD4T, HEK293T, endometrial, NB4
Seq Type List m6A-seq,MeRIP-seq
Transcript ID List ENST00000341376.10,ENST00000353205.5
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000341376.10ENSG00000001167.14NFYAprotein_codingcds-5
ENST00000353205.5ENSG00000001167.14NFYAprotein_codingcds-4
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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