RMBase v3.0: Decipher the Landscape, Mechanism and Function of RNA Modifications by Integrating Multi-dimensional High-throughput Sequencing Data.

Details of RNA Modification Site of hg38

mod ID

m6A_site_72803

mod Site

chr1:202729869-202729870:-

mod Type

m6A

Sequence

CAAACTGAGCCACCCCAAGGACATGAACAATTTCAAGTTAG

Motif Score

3.64304761904762

RNA Structure Motif

....((.......))...((((....)))).

MFE

-0.40

Support Dataset Num

Support sub-Dataset Num

108

Support Dataset List

Support sub-Dataset List

GSM2739502, GSM2739503, GSM2739506, GSM2739507, GSM2739522, GSM2739523, GSM2739534, GSM2739535, GSM2991403, GSM2884195, GSM2884197, GSM2884199, GSM2987447, GSM2987448, GSM2987449, GSM3083806, GSM3083809, GSM3083810, GSM3396437, GSM3396438, GSM3582048, GSM3582049, GSM3582052, GSM3582053, GSM3582054, GSE129842, GSM928399, GSM928401, GSM928403, GSM1135020, GSM1135021, GSM1135032, GSM1135033, GSM1166139, GSM1166140, GSM1272358, GSM1272360, GSM1272362, GSM1272364, GSM1272366, GSM1272368, GSM1339393, GSM1339395, GSM1339401, GSM1339403, GSM1339405, GSM1339407, GSM1339425, GSM1339427, GSM1339439, GSM1594131, GSM1723347, GSM1723349, GSM1723351, GSM1828594, GSM1828596, GSM2010454, GSM2010456, GSM2203043, GSM2203044, GSM2203047, GSM2203051, GSM2203052, GSM2203055, GSM2203056, GSM2203059, GSM2203060, GSM2203063, GSM2203064, GSM2283210, GSM2283211, GSM2283212, GSM2283213, GSM2283214, GSM2283215, GSM2324292, GSM2324298, GSM2324308, GSM2324310, GSM2332975, GSM2332977, GSM2332978, GSM2332985, GSM2332986, GSM2332987, GSM2332988, GSM2332989, GSM2332990, GSM2417477, GSM2417479, GSM2460347, GSM2464901, GSM2464903, GSM2464905, GSM2464907, GSM2464909, GSM2464911, GSM2464913, GSM2464915, GSM2464917, GSM2464919, GSM2464921, GSM2464923, GSM2464927, GSM2464931, GSM2483505, GSM2564019, GSM2564022

Cell/Tissue List

HeLa, CD34, HepG2, HEK293T, A549, hESC-HEK293T, U2OS, H1A, H1B, hNPCs, hESCs, fibroblasts, GM12878, LCLs, CD8T, MM6, Huh7, Jurkat, CD4T, peripheral-blood, GSC-11, HEK293A-TOA, iSLK, endometrial, HEC-1-A, GSCs, NB4

Seq Type List

m6A-seq,MeRIP-seq,MAZTER-seq,m6A-CLIP/IP

Transcript ID List

ENST00000649542.1,ENST00000650417.1,ENST00000649230.1,ENST00000647757.1,ENST00000649339.1,ENST00000648338.1,ENST00000647747.1,ENST00000649770.1,ENST00000648056.1,ENST00000650506.1,ENST00000367265.8,ENST00000472822.6,ENST00000648469.1,ENST00000649089.1,ENST00000647657.1,ENST00000650569.1,ENST00000648473.1,ENST00000498276.2,ENST00000367264.7,ENST00000649400.1,ENST00000491153.2

Transcript Detail

Transcript ID	Gene ID	Gene Name	Gene Type	Region
ENST00000649542.1	ENSG00000117139.17	KDM5B	processed_transcript	exon-26
ENST00000650417.1	ENSG00000117139.17	KDM5B	nonsense_mediated_decay	utr3-26
ENST00000649230.1	ENSG00000117139.17	KDM5B	retained_intron	exon-12
ENST00000647757.1	ENSG00000117139.17	KDM5B	processed_transcript	exon-26
ENST00000649339.1	ENSG00000117139.17	KDM5B	retained_intron	exon-1
ENST00000648338.1	ENSG00000117139.17	KDM5B	protein_coding	cds-26
ENST00000647747.1	ENSG00000117139.17	KDM5B	retained_intron	exon-3
ENST00000649770.1	ENSG00000117139.17	KDM5B	protein_coding	cds-25
ENST00000648056.1	ENSG00000117139.17	KDM5B	protein_coding	cds-26
ENST00000650506.1	ENSG00000117139.17	KDM5B	retained_intron	exon-9
ENST00000367265.8	ENSG00000117139.17	KDM5B	protein_coding	cds-26
ENST00000472822.6	ENSG00000117139.17	KDM5B	retained_intron	exon-4
ENST00000648469.1	ENSG00000117139.17	KDM5B	protein_coding	cds-25
ENST00000649089.1	ENSG00000117139.17	KDM5B	nonsense_mediated_decay	utr3-14
ENST00000647657.1	ENSG00000117139.17	KDM5B	retained_intron	exon-4
ENST00000650569.1	ENSG00000117139.17	KDM5B	protein_coding	cds-25
ENST00000648473.1	ENSG00000117139.17	KDM5B	protein_coding	cds-26
ENST00000498276.2	ENSG00000117139.17	KDM5B	retained_intron	exon-12
ENST00000367264.7	ENSG00000117139.17	KDM5B	protein_coding	cds-27
ENST00000649400.1	ENSG00000117139.17	KDM5B	retained_intron	exon-10
ENST00000491153.2	ENSG00000117139.17	KDM5B	retained_intron	exon-2

Conserved Sites

mm10:m6A_site_26751;panTro5:m6A_site_6052;rheMac8:m6A_site_5316;rn6:m6A_site_29199

snoRNA Num

snoRNA Guide Site

snoRNA Guide Detail

writer Num

Writer Name List

Writer Catalysis Detail

PubMed ID

Discription & Help

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

♥ Click the "Show Detail" button to show detailed list and click again to hide it.