Details of RNA Modification Site of hg38
mod ID m6A_site_72823 mod Site chr1:202733527-202733528:-
mod Type m6A Sequence TATGATTGAAAGAACCGTGAACTGGCAGCACAGAGCCCAGC
Motif Score 3.37338095238095
RNA Structure Motif ................(((......)))...
 MFE -2.40
Support Dataset Num 14 Support sub-Dataset Num 59
Support Dataset List
Support sub-Dataset List

GSM2739502, GSM2739503, GSM2739506, GSM2739507, GSM2739523, GSM2991403, GSM2884195, GSM2884197, GSM2884199, GSM3396437, GSM3396438, GSM3582046, GSM3582047, GSM3582052, GSM3582053, GSM3582054, GSM928399, GSM928401, GSM928403, GSM908337, GSM1135032, GSM1135033, GSM1339393, GSM1339395, GSM1339401, GSM1339403, GSM1339405, GSM1339407, GSM1339425, GSM1339427, GSM1339429, GSM1339439, GSM1723347, GSM2010454, GSM2010456, GSM2283210, GSM2283211, GSM2283212, GSM2324310, GSM2417477, GSM2417478, GSM2417479, GSM2460345, GSM2460347, GSM2460350, GSM2460352, GSM2460354, GSM2460356, GSM2460358, GSM2754211, GSM2754220, GSM2754222, GSM2754224, GSM2754235, GSM2754237, GSM2754240, GSM2754244, GSM2754246, GSM2754248
Cell/Tissue List

HeLa, CD34, HEK293T, A549, HepG2, hNPCs, hESCs, fibroblasts, LCLs, MM6, Jurkat, peripheral-blood, HEK293A-TOA, iSLK, MSC, TIME
Seq Type List m6A-seq,MeRIP-seq
Transcript ID List ENST00000647657.1,ENST00000650417.1,ENST00000649542.1,ENST00000648056.1,ENST00000649230.1,ENST00000647757.1,ENST00000472822.6,ENST00000648469.1,ENST00000650569.1,ENST00000235790.9,ENST00000648473.1,ENST00000498276.2,ENST00000367264.7,ENST00000650506.1,ENST00000649089.1,ENST00000648338.1,ENST00000649770.1,ENST00000649400.1,ENST00000367265.8
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000647657.1ENSG00000117139.17KDM5Bretained_intronexon-1
ENST00000650417.1ENSG00000117139.17KDM5Bnonsense_mediated_decayutr3-23
ENST00000649542.1ENSG00000117139.17KDM5Bprocessed_transcriptexon-23
ENST00000648056.1ENSG00000117139.17KDM5Bprotein_codingcds-23
ENST00000649230.1ENSG00000117139.17KDM5Bretained_intronexon-9
ENST00000647757.1ENSG00000117139.17KDM5Bprocessed_transcriptexon-23
ENST00000472822.6ENSG00000117139.17KDM5Bretained_intronexon-1
ENST00000648469.1ENSG00000117139.17KDM5Bprotein_codingcds-22
ENST00000650569.1ENSG00000117139.17KDM5Bprotein_codingcds-22
ENST00000235790.9ENSG00000117139.17KDM5Bprotein_codingcds-23
ENST00000648473.1ENSG00000117139.17KDM5Bprotein_codingcds-23
ENST00000498276.2ENSG00000117139.17KDM5Bretained_intronexon-9
ENST00000367264.7ENSG00000117139.17KDM5Bprotein_codingcds-24
ENST00000650506.1ENSG00000117139.17KDM5Bretained_intronexon-7
ENST00000649089.1ENSG00000117139.17KDM5Bnonsense_mediated_decayutr3-11
ENST00000648338.1ENSG00000117139.17KDM5Bprotein_codingcds-23
ENST00000649770.1ENSG00000117139.17KDM5Bprotein_codingcds-22
ENST00000649400.1ENSG00000117139.17KDM5Bretained_intronexon-8
ENST00000367265.8ENSG00000117139.17KDM5Bprotein_codingcds-23
Conserved Sites mm10:m6A_site_26735;panTro5:m6A_site_6061
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 1 Writer Name List RBM15B
Writer Catalysis Detail

Writer Name Writer ID Writer Binding Site Source
RBM15BRBM15B:CH18860chr1:202733527-202733528SBDH685-18860
PubMed ID

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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