Details of RNA Modification Site of hg38
mod ID m6A_site_72881 mod Site chr1:202760568-202760569:-
mod Type m6A Sequence ACTTTTATTGCTACAGGTGGACCTGTATGTCTGTCTTTTAT
Motif Score 3.62240476190476
RNA Structure Motif ....((((((((....)))))).))......
 MFE -7.30
Support Dataset Num 3 Support sub-Dataset Num 5
Support Dataset List GSE102493, GSE55572, GSE83438
Support sub-Dataset List

GSM2739502, GSM2739503, GSM2991416, GSM1339393, GSM2203052
Cell/Tissue List HeLa, hNPCs, Huh7
Seq Type List m6A-seq,MeRIP-seq
Transcript ID List ENST00000648338.1,ENST00000367265.8,ENST00000648056.1,ENST00000649321.1,ENST00000649542.1,ENST00000235790.9,ENST00000650422.1,ENST00000648738.1,ENST00000648744.1,ENST00000647757.1,ENST00000367264.7,ENST00000649770.1,ENST00000650569.1,ENST00000648469.1,ENST00000648473.1,ENST00000650417.1
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000648338.1ENSG00000117139.17KDM5Bprotein_codingcds-8
ENST00000367265.8ENSG00000117139.17KDM5Bprotein_codingcds-8
ENST00000648056.1ENSG00000117139.17KDM5Bprotein_codingcds-8
ENST00000649321.1ENSG00000117139.17KDM5Bretained_intronexon-2
ENST00000649542.1ENSG00000117139.17KDM5Bprocessed_transcriptexon-8
ENST00000235790.9ENSG00000117139.17KDM5Bprotein_codingcds-8
ENST00000650422.1ENSG00000117139.17KDM5Bretained_intronexon-7
ENST00000648738.1ENSG00000117139.17KDM5Bprotein_codingcds-8
ENST00000648744.1ENSG00000117139.17KDM5Bretained_intronexon-4
ENST00000647757.1ENSG00000117139.17KDM5Bprocessed_transcriptexon-8
ENST00000367264.7ENSG00000117139.17KDM5Bprotein_codingcds-9
ENST00000649770.1ENSG00000117139.17KDM5Bprotein_codingcds-7
ENST00000650569.1ENSG00000117139.17KDM5Bprotein_codingcds-7
ENST00000648469.1ENSG00000117139.17KDM5Bprotein_codingcds-7
ENST00000648473.1ENSG00000117139.17KDM5Bprotein_codingcds-8
ENST00000650417.1ENSG00000117139.17KDM5Bnonsense_mediated_decayutr3-8
Conserved Sites mm10:m6A_site_26697
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 29507755, 24981863, 27773535

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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