| mod ID | m6A_site_736276 | mod Site | chr6:142770609-142770610:- | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
ATGAGAATATGACCCAAAGGACACTGGTCACCAACGCAGCC |
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| Motif Score | 3.64304761904762 | ||||||||||||||||||||
| RNA Structure Motif |
....(((((...((....)))))))...... |
MFE | -5.40 | ||||||||||||||||||
| Support Dataset Num | 9 | Support sub-Dataset Num | 21 | ||||||||||||||||||
| Support Dataset List | |||||||||||||||||||||
| Support sub-Dataset List |
GSM2739502, GSM2739503, GSM2739506, GSM2739507, GSM2739522, GSM2739523, GSM2739534, GSM2739535, GSM2991403, GSM3396437, GSM3396438, GSE129842, GSM1135032, GSM1135033, GSM1339405, GSM1594131, GSM1828594, GSM2417477, GSM2417478, GSM2417479, GSM2464911 |
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| Cell/Tissue List |
HeLa, HEK293T, hESC-HEK293T, fibroblasts, GM12878, CD8T, HEK293A-TOA, endometrial |
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| Seq Type List | m6A-seq,MeRIP-seq,MAZTER-seq,m6A-CLIP/IP | ||||||||||||||||||||
| Transcript ID List | ENST00000367604.6,ENST00000367603.8,ENST00000012134.7 | ||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | mm10:m6A_site_46496;rn6:m6A_site_293 | ||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||||||||||||
| snoRNA Guide Detail | na | ||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | ||||||||||||||||||
| Writer Catalysis Detail | na | ||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
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School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1