Details of RNA Modification Site of hg38
mod ID m6A_site_743235 mod Site chr6:169217578-169217579:-
mod Type m6A Sequence CCAGTTTGGTGATATATGAGACTTTATGTGGAGTGAAAATT
Motif Score 3.31938095238095
RNA Structure Motif .......(((((((....)))))))......
 MFE -1.80
Support Dataset Num 2 Support sub-Dataset Num 6
Support Dataset List GSE55572, GSE93676
Support sub-Dataset List

GSM1339395, GSM1339403, GSM1339405, GSM2460345, GSM2460352, GSM2460354
Cell/Tissue List hESCs, fibroblasts, iSLK, MSC
Seq Type List m6A-seq,MeRIP-seq
Transcript ID List ENST00000366787.7,ENST00000488355.1,ENST00000617924.4,ENST00000649844.1
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000366787.7ENSG00000186340.15THBS2protein_codingutr3-23
ENST00000488355.1ENSG00000186340.15THBS2processed_transcriptexon-5
ENST00000617924.4ENSG00000186340.15THBS2protein_codingutr3-22
ENST00000649844.1ENSG00000186340.15THBS2protein_codingutr3-22
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 24981863, 29109479

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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