| mod ID | m6A_site_750374 | mod Site | chr7:23312230-23312231:- | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
CTAGCCAGTTGTTTCTGAGGACCAGGCAACTTTTGAACTCC |
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| Motif Score | 3.62240476190476 | ||||||||||||||||||||
| RNA Structure Motif |
.((((((..(((.....)))))))))..... |
MFE | -6.60 | ||||||||||||||||||
| Support Dataset Num | 18 | Support sub-Dataset Num | 48 | ||||||||||||||||||
| Support Dataset List | |||||||||||||||||||||
| Support sub-Dataset List |
GSM2739507, GSM2991403, GSM2991416, GSM3396437, GSM3396438, GSM3582052, GSM3582053, GSM3582054, GSM928399, GSM928401, GSM1135032, GSM1135033, GSM1272358, GSM1272360, GSM1272366, GSM1272368, GSM1339393, GSM1339395, GSM1339401, GSM1339403, GSM1339405, GSM1339407, GSM1339425, GSM1339427, GSM1339429, GSM1339439, GSM1594131, GSM1723351, GSM1982263, GSM2010454, GSM2203044, GSM2203047, GSM2203051, GSM2203052, GSM2203055, GSM2203056, GSM2203059, GSM2203060, GSM2203063, GSM2203064, GSM2283211, GSM2283212, GSM2283213, GSM2324292, GSM2332975, GSM2460362, GSM2464927, GSM2564019 |
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| Cell/Tissue List |
HeLa, HEK293T, A549, H1A, H1B, hNPCs, hESCs, fibroblasts, GM12878, LCLs, H1299, MM6, Huh7, Jurkat, peripheral-blood, GSC-11, TREX, HEC-1-A, NB4 |
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| Seq Type List | m6A-seq,MeRIP-seq | ||||||||||||||||||||
| Transcript ID List | ENST00000258729.8,ENST00000619562.4,ENST00000421467.6 | ||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | mm10:m6A_site_503532;panTro5:m6A_site_59239;rheMac8:m6A_site_39786 | ||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||||||||||||
| snoRNA Guide Detail | na | ||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | ||||||||||||||||||
| Writer Catalysis Detail | na | ||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1