| mod ID | m6A_site_754159 | mod Site | chr7:36854729-36854730:- | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
TCTCGCTCCATCTCTAATAGACTAAACCTAAATGCCTCTAG |
||||||||||||||||||
| Motif Score | 3.31938095238095 | ||||||||||||||||||||
| RNA Structure Motif |
............................... |
MFE | 0.00 | ||||||||||||||||||
| Support Dataset Num | 12 | Support sub-Dataset Num | 23 | ||||||||||||||||||
| Support Dataset List | |||||||||||||||||||||
| Support sub-Dataset List |
GSM1166139, GSM1339439, GSM1594131, GSM1723347, GSM1723349, GSM1723351, GSM1828594, GSM2203047, GSM2203052, GSM2203063, GSM2203064, GSM2283211, GSM2283213, GSM2283214, GSM2324310, GSM2417477, GSM2417478, GSM2417479, GSM2460360, GSM2460362, GSM2754226, GSM2564019, GSM2602071 |
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| Cell/Tissue List |
U2OS, A549, GM12878, LCLs, CD8T, Huh7, Jurkat, CD4T, peripheral-blood, HEK293A-TOA, TREX, NB4, AML |
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| Seq Type List | MeRIP-seq,m6A-seq,m6A-CLIP/IP,miCLIP | ||||||||||||||||||||
| Transcript ID List | ENST00000396040.6,ENST00000310758.8,ENST00000396045.7 | ||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | mm10:m6A_site_155106;rheMac8:m6A_site_39612 | ||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||||||||||||
| snoRNA Guide Detail | na | ||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | ||||||||||||||||||
| Writer Catalysis Detail | na | ||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1