Details of RNA Modification Site of hg38
mod ID m6A_site_756177 mod Site chr7:44539086-44539087:-
mod Type m6A Sequence GAACTTCAGCGGAATCCTGGACCTGGACTTGCTGCTGGAGC
Motif Score 3.62240476190476
RNA Structure Motif .((((((..(((.......))).))))))..
 MFE -8.10
Support Dataset Num 4 Support sub-Dataset Num 6
Support Dataset List
Support sub-Dataset List

GSM2739522, GSM2739523, GSM2987449, GSM2417479, GSM2464911, GSM2464913
Cell/Tissue List

HeLa, HepG2, HEK293A-TOA, endometrial
Seq Type List m6A-seq
Transcript ID List ENST00000423141.1,ENST00000546276.5,ENST00000381160.7,ENST00000289547.8
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000423141.1ENSG00000015520.14NPC1L1protein_codingcds-2
ENST00000546276.5ENSG00000015520.14NPC1L1protein_codingcds-2
ENST00000381160.7ENSG00000015520.14NPC1L1protein_codingcds-2
ENST00000289547.8ENSG00000015520.14NPC1L1protein_codingcds-2
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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