Details of RNA Modification Site of hg38
mod ID m6A_site_763701 mod Site chr7:87600167-87600168:-
mod Type m6A Sequence CGGAATGGATCTTGAAGGGGACCGCAATGGAGGAGCAAAGA
Motif Score 3.62240476190476
RNA Structure Motif .((.((((....)))))).............
 MFE -3.70
Support Dataset Num 3 Support sub-Dataset Num 7
Support Dataset List GSE110320, GSE83438, GSE93911
Support sub-Dataset List

GSM2987449, GSM2203047, GSM2464907, GSM2464909, GSM2464911, GSM2464917, GSM2464919
Cell/Tissue List HepG2, Huh7, endometrial
Seq Type List m6A-seq,MeRIP-seq
Transcript ID List ENST00000416177.1,ENST00000622132.4,ENST00000265724.7,ENST00000543898.5
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000416177.1ENSG00000085563.14ABCB1protein_codingcds-4
ENST00000622132.4ENSG00000085563.14ABCB1protein_codingcds-2
ENST00000265724.7ENSG00000085563.14ABCB1protein_codingcds-3
ENST00000543898.5ENSG00000085563.14ABCB1protein_codingcds-3
Conserved Sites mm10:m6A_site_450727
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 3086759, 27773535, 30154548

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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