Details of RNA Modification Site of hg38
mod ID m6A_site_77325 mod Site chr1:211667199-211667200:-
mod Type m6A Sequence GAGCTTTGTGTTCGTGAGAGACTAGCAGAGGACAAACTGGC
Motif Score 3.31938095238095
RNA Structure Motif ((((.(((((.((...)).)).))).)))).
 MFE -5.10
Support Dataset Num 8 Support sub-Dataset Num 18
Support Dataset List
Support sub-Dataset List

GSM2739506, GSM2739522, GSM2739523, GSM2739534, GSM2739535, GSM2991403, GSM2987449, GSM3396438, GSM1339393, GSM1339427, GSM1723351, GSM1908208, GSM1908212, GSM2010454, GSM2010456, GSM2283210, GSM2283211, GSM2283213
Cell/Tissue List

HeLa, HepG2, HEK293T, hNPCs, A549, LCLs, MT4, MM6, Jurkat
Seq Type List m6A-seq,MeRIP-seq
Transcript ID List ENST00000462283.5,ENST00000366999.9,ENST00000366998.4,ENST00000540251.5,ENST00000489633.1
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000462283.5ENSG00000117650.13NEK2processed_transcriptexon-4
ENST00000366999.9ENSG00000117650.13NEK2protein_codingcds-7
ENST00000366998.4ENSG00000117650.13NEK2protein_codingcds-7
ENST00000540251.5ENSG00000117650.13NEK2protein_codingcds-7
ENST00000489633.1ENSG00000117650.13NEK2processed_transcriptexon-2
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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