| mod ID | m6A_site_777359 | mod Site | chr7:131510918-131510919:- | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
GCCACCCCAACAAGCTCGGGACATGACCATCTTATGAAAAT |
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| Motif Score | 3.64304761904762 | ||||||||||||||||||||
| RNA Structure Motif |
(((.........))).(((((.....))))) |
MFE | -3.30 | ||||||||||||||||||
| Support Dataset Num | 10 | Support sub-Dataset Num | 40 | ||||||||||||||||||
| Support Dataset List | |||||||||||||||||||||
| Support sub-Dataset List |
GSM2739502, GSM2739503, GSM2739507, GSM2991403, GSM3396437, GSM3396438, GSM3582049, GSM3582052, GSM3582053, GSM3582054, GSE129842, GSM1135020, GSM1135021, GSM1135032, GSM1135033, GSM1166139, GSM1166140, GSM1166141, GSM1166142, GSM1166143, GSM1166144, GSM1339395, GSM1339403, GSM1339407, GSM1339427, GSM2203047, GSM2460345, GSM2460347, GSM2460348, GSM2460350, GSM2460356, GSM2460360, GSM2754214, GSM2754222, GSM2754224, GSM2754226, GSM2754235, GSM2754246, GSM2754248, GSM2464931 |
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| Cell/Tissue List |
HeLa, HEK293T, A549, hESC-HEK293T, U2OS, hESCs, fibroblasts, Huh7, iSLK, TIME, TREX, HEC-1-A |
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| Seq Type List | m6A-seq,MeRIP-seq,MAZTER-seq | ||||||||||||||||||||
| Transcript ID List | ENST00000446198.5,ENST00000322985.9,ENST00000378555.8 | ||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | na | ||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||||||||||||
| snoRNA Guide Detail | na | ||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | ||||||||||||||||||
| Writer Catalysis Detail | na | ||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1