Details of RNA Modification Site of hg38
mod ID m6A_site_777953 mod Site chr7:134947533-134947534:+
mod Type m6A Sequence TGGAGGGAGGGCCAGCGTGGACACCAAGGAGGCTGAGGGCG
Motif Score 3.64304761904762
RNA Structure Motif ....((((..(.(((...))).)..))))..
 MFE -8.20
Support Dataset Num 7 Support sub-Dataset Num 29
Support Dataset List
Support sub-Dataset List

GSM2739502, GSM2739503, GSM2739506, GSM2739522, GSM2739523, GSM2739534, GSM2739535, GSM2987447, GSM2987448, GSM908331, GSM1166139, GSM1166140, GSM1166141, GSM1166142, GSM1166143, GSM1166144, GSM1272362, GSM2203044, GSM2203047, GSM2203056, GSM2203059, GSM2203060, GSM2464905, GSM2464907, GSM2464909, GSM2464911, GSM2464915, GSM2464917, GSM2464919
Cell/Tissue List

HeLa, HepG2, U2OS, H1A, Huh7, endometrial
Seq Type List m6A-seq,MeRIP-seq
Transcript ID List ENST00000436461.6,ENST00000443197.5,ENST00000361901.6,ENST00000393118.6,ENST00000482470.5,ENST00000417172.5,ENST00000472096.1,ENST00000422748.5,ENST00000424922.5,ENST00000495522.1,ENST00000361675.7,ENST00000430085.5
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000436461.6ENSG00000122786.20CALD1protein_codingcds-7
ENST00000443197.5ENSG00000122786.20CALD1nonsense_mediated_decaycds-5
ENST00000361901.6ENSG00000122786.20CALD1protein_codingcds-7
ENST00000393118.6ENSG00000122786.20CALD1protein_codingcds-6
ENST00000482470.5ENSG00000122786.20CALD1retained_intronexon-7
ENST00000417172.5ENSG00000122786.20CALD1protein_codingcds-7
ENST00000472096.1ENSG00000122786.20CALD1retained_intronexon-2
ENST00000422748.5ENSG00000122786.20CALD1protein_codingcds-8
ENST00000424922.5ENSG00000122786.20CALD1protein_codingcds-5
ENST00000495522.1ENSG00000122786.20CALD1protein_codingcds-6
ENST00000361675.7ENSG00000122786.20CALD1protein_codingcds-8
ENST00000430085.5ENSG00000122786.20CALD1nonsense_mediated_decayutr3-7
Conserved Sites mm10:m6A_site_499790
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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