| mod ID | m6A_site_787114 | mod Site | chr8:13085894-13085895:- | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
TGGTACACAAAATCTTTTGGACATTTGTGTGCAGCTGAAGT |
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| Motif Score | 3.64304761904762 | ||||||||||||||||||||||||||||||
| RNA Structure Motif |
((((((.(((...)))..))))))....... |
MFE | -3.70 | ||||||||||||||||||||||||||||
| Support Dataset Num | 3 | Support sub-Dataset Num | 6 | ||||||||||||||||||||||||||||
| Support Dataset List | GSE120229, GSE129842, GSE90914 | ||||||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM3396437, GSM3396438, GSE129842, GSM2417477, GSM2417478, GSM2417479 |
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| Cell/Tissue List |
HEK293T, hESC-HEK293T, HEK293A-TOA |
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| Seq Type List | MeRIP-seq,MAZTER-seq,m6A-seq | ||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000358919.6,ENST00000276297.9,ENST00000520226.5,ENST00000512044.6,ENST00000510318.5 | ||||||||||||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | mm10:m6A_site_587411;susScr11:m6A_site_54038 | ||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | ||||||||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | ||||||||||||||||||||||||||||
| Writer Catalysis Detail | na | ||||||||||||||||||||||||||||||
| PubMed ID | 31257032, 28525753 |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
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School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1