Details of RNA Modification Site of hg38
mod ID m6A_site_78882 mod Site chr1:214655244-214655245:+
mod Type m6A Sequence TACTTTTATTTTGTAGATGGACAATCTAAAATATGTAAATC
Motif Score 3.64304761904762
RNA Structure Motif .(((((..(((((.....))))))))))...
 MFE -3.40
Support Dataset Num 4 Support sub-Dataset Num 7
Support Dataset List
Support sub-Dataset List

GSE129842, GSM928399, GSM928401, GSM928403, GSM1339393, GSM1339407, GSM2203063
Cell/Tissue List

hESC-HEK293T, hNPCs, fibroblasts, Huh7
Seq Type List MAZTER-seq,MeRIP-seq,m6A-seq
Transcript ID List ENST00000366955.8,ENST00000469862.1
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000366955.8ENSG00000117724.13CENPFprotein_codingcds-17
ENST00000469862.1ENSG00000117724.13CENPFprocessed_transcriptexon-1
Conserved Sites panTro5:m6A_site_6702;rheMac8:m6A_site_4753
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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