Details of RNA Modification Site of hg38
mod ID m6A_site_791295 mod Site chr8:27459041-27459042:+
mod Type m6A Sequence TTAATGTGAGTTTGGTCTGGACTGACAGCATGTGCCCTCCT
Motif Score 4.06504166666667
RNA Structure Motif ((.(((((.....))))).)).((....)).
 MFE -5.60
Support Dataset Num 2 Support sub-Dataset Num 2
Support Dataset List GSE74016, GSE98623
Support sub-Dataset List GSM1908208, GSM2602070
Cell/Tissue List MT4, AML
Seq Type List MeRIP-seq,miCLIP
Transcript ID List ENST00000346049.10,ENST00000517339.5,ENST00000397501.5,ENST00000420218.3
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000346049.10ENSG00000120899.18PTK2Bprotein_codingutr3-31
ENST00000517339.5ENSG00000120899.18PTK2Bprotein_codingutr3-29
ENST00000397501.5ENSG00000120899.18PTK2Bprotein_codingutr3-36
ENST00000420218.3ENSG00000120899.18PTK2Bprotein_codingutr3-30
Conserved Sites rheMac8:m6A_site_54532;susScr11:m6A_site_38412
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 27572442, 28920958

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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