| mod ID | m6A_site_79161 | mod Site | chr1:218346867-218346868:+ | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
GCTCACCAGTCCCCCAGAAGACTATCCTGAGCCCGAGGAAG |
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| Motif Score | 3.31938095238095 | |||||||||||||||
| RNA Structure Motif |
..((((........))))............. |
MFE | -2.50 | |||||||||||||
| Support Dataset Num | 11 | Support sub-Dataset Num | 34 | |||||||||||||
| Support Dataset List | ||||||||||||||||
| Support sub-Dataset List |
GSM3396437, GSM3582052, GSM3582053, GSM3582054, GSM1166139, GSM1166140, GSM1166141, GSM1166142, GSM1166143, GSM1339405, GSM1339425, GSM1339427, GSM1339429, GSM1339439, GSM1982257, GSM2010454, GSM2203056, GSM2203059, GSM2203060, GSM2332975, GSM2332977, GSM2332978, GSM2417477, GSM2417478, GSM2417479, GSM2460345, GSM2460347, GSM2460354, GSM2754213, GSM2754235, GSM2464905, GSM2464907, GSM2464911, GSM2464913 |
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| Cell/Tissue List |
HEK293T, A549, U2OS, fibroblasts, MM6, Huh7, GSC-11, HEK293A-TOA, iSLK, MSC, endometrial |
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| Seq Type List | MeRIP-seq,m6A-seq | |||||||||||||||
| Transcript ID List | ENST00000366930.9,ENST00000366929.4 | |||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | mm10:m6A_site_41921;rn6:m6A_site_31356 | |||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||
| writer Num | 0 | Writer Name List | na | |||||||||||||
| Writer Catalysis Detail | na | |||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1