Details of RNA Modification Site of hg38
mod ID m6A_site_792048 mod Site chr8:29052317-29052318:+
mod Type m6A Sequence CTGTATGAGAACACGATGGGACTGCTTTGCTGTTCTCTTTA
Motif Score 4.06504166666667
RNA Structure Motif ..(((((((((.(......).))).))))))
 MFE -6.70
Support Dataset Num 6 Support sub-Dataset Num 15
Support Dataset List
Support sub-Dataset List

GSM2739506, GSM2991403, GSM928399, GSM928401, GSM1339403, GSM1339425, GSM1339429, GSM1339439, GSM2203052, GSM2203060, GSM2417477, GSM2417479, GSM2460354, GSM2460360, GSM2754224
Cell/Tissue List

HeLa, HEK293T, fibroblasts, A549, Huh7, HEK293A-TOA, MSC, TREX, TIME
Seq Type List m6A-seq,MeRIP-seq
Transcript ID List ENST00000287701.15,ENST00000522468.1,ENST00000397358.7
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000287701.15ENSG00000147421.18HMBOX1protein_codingutr3-10
ENST00000522468.1ENSG00000147421.18HMBOX1nonsense_mediated_decayintron-1
ENST00000397358.7ENSG00000147421.18HMBOX1protein_codingutr3-11
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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