| mod ID | m6A_site_801782 | mod Site | chr8:80976870-80976871:- | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
TCATCAGTAAATAAACCTGGACAGTTAGTGAATAAATCGGG |
||||||||
| Motif Score | 3.64304761904762 | ||||||||||
| RNA Structure Motif |
............................... |
MFE | 0.00 | ||||||||
| Support Dataset Num | 12 | Support sub-Dataset Num | 21 | ||||||||
| Support Dataset List | |||||||||||
| Support sub-Dataset List |
GSM2884195, GSM2884197, GSM3396437, GSM3396438, GSE129842, GSM928399, GSM928401, GSM1594131, GSM1828594, GSM2010454, GSM2010456, GSM2203043, GSM2203047, GSM2203060, GSM2283214, GSM2283215, GSM2324298, GSM2417477, GSM2417478, GSM2460352, GSM2460354 |
||||||||||
| Cell/Tissue List |
CD34, HEK293T, hESC-HEK293T, GM12878, CD8T, MM6, Huh7, CD4T, peripheral-blood, HEK293A-TOA, MSC |
||||||||||
| Seq Type List | m6A-seq,MeRIP-seq,MAZTER-seq,m6A-CLIP/IP | ||||||||||
| Transcript ID List | ENST00000220597.4 | ||||||||||
| Transcript Detail |
|
||||||||||
| Conserved Sites | panTro5:m6A_site_62352;susScr11:m6A_site_89876 | ||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||
| snoRNA Guide Detail | na | ||||||||||
| writer Num | 0 | Writer Name List | na | ||||||||
| Writer Catalysis Detail | na | ||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
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School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1