| mod ID | m6A_site_805271 | mod Site | chr8:100952296-100952297:- | ||||||||||||||||||||||||||||||||||||||||||||||||
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| mod Type | m6A | Sequence |
CTGCCCTAGGTGCACTCGGGACAAGCGTAGAGGAGCTGGAA |
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| Motif Score | 3.64304761904762 | ||||||||||||||||||||||||||||||||||||||||||||||||||
| RNA Structure Motif |
......((.(((............)))..)) |
MFE | -2.70 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Support Dataset Num | 17 | Support sub-Dataset Num | 55 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Support Dataset List | |||||||||||||||||||||||||||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM2739506, GSM2739507, GSM2739522, GSM2739523, GSM2739534, GSM2739535, GSM2991403, GSM3582046, GSM3582047, GSM3582048, GSM3582049, GSM3582052, GSM3582053, GSM3582054, GSM928399, GSM928401, GSM1135020, GSM1272358, GSM1272360, GSM1272362, GSM1272364, GSM1272366, GSM1272368, GSM1339393, GSM1339395, GSM1339401, GSM1339405, GSM1339425, GSM1339427, GSM1908206, GSM1908208, GSM1908210, GSM1908212, GSM1982257, GSM1982263, GSM2010454, GSM2010456, GSM2283210, GSM2283213, GSM2324292, GSM2324298, GSM2324308, GSM2324310, GSM2332975, GSM2332977, GSM2332978, GSM2332987, GSM2460345, GSM2464911, GSM2464913, GSM2464927, GSM2464931, GSM2483505, GSM2564019, GSM2564022 |
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| Cell/Tissue List |
HeLa, A549, HEK293T, H1A, H1B, hNPCs, hESCs, fibroblasts, MT4, H1299, MM6, Jurkat, peripheral-blood, GSC-11, iSLK, endometrial, HEC-1-A, GSCs, NB4 |
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| Seq Type List | m6A-seq,MeRIP-seq | ||||||||||||||||||||||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000395948.6,ENST00000523131.1,ENST00000353245.7,ENST00000523938.1,ENST00000492736.1,ENST00000437293.5,ENST00000395957.6,ENST00000418997.1,ENST00000457309.2 | ||||||||||||||||||||||||||||||||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | susScr11:m6A_site_89412 | ||||||||||||||||||||||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||||||||||||||||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | ||||||||||||||||||||||||||||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | ||||||||||||||||||||||||||||||||||||||||||||||||
| Writer Catalysis Detail | na | ||||||||||||||||||||||||||||||||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1