Details of RNA Modification Site of hg38
mod ID m6A_site_808422 mod Site chr8:123534730-123534731:-
mod Type m6A Sequence AGCCAAGAAGAGAAAGAAGGACATGCTGAATAGCAAAACCA
Motif Score 3.64304761904762
RNA Structure Motif ..................((((....)))).
 MFE -2.60
Support Dataset Num 2 Support sub-Dataset Num 2
Support Dataset List GSE125803, GSE129842
Support sub-Dataset List GSM3582052, GSE129842
Cell/Tissue List A549, hESC-HEK293T
Seq Type List MeRIP-seq,MAZTER-seq
Transcript ID List ENST00000520511.1,ENST00000517956.5,ENST00000443022.2,ENST00000521719.5
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000520511.1ENSG00000156804.7FBXO32retained_intronexon-2
ENST00000517956.5ENSG00000156804.7FBXO32protein_codingcds-2
ENST00000443022.2ENSG00000156804.7FBXO32protein_codingcds-2
ENST00000521719.5ENSG00000156804.7FBXO32retained_intronexon-2
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 31597913, 31257032

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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