Details of RNA Modification Site of hg38
mod ID m6A_site_814846 mod Site chr9:2191427-2191428:+
mod Type m6A Sequence TGTAAGTGTAGCCGACTGGGACTGAAGGCGGAGACGCCCTC
Motif Score 4.06504166666667
RNA Structure Motif ..((..(((.((........)).)))..)).
 MFE -7.20
Support Dataset Num 8 Support sub-Dataset Num 27
Support Dataset List
Support sub-Dataset List

GSM2739502, GSM2739503, GSM2739506, GSM2739507, GSM2739534, GSM2739535, GSM2991403, GSM3396438, GSM928399, GSM1723347, GSM1723349, GSM1723351, GSM2010454, GSM2203047, GSM2203052, GSM2203063, GSM2203064, GSM2283210, GSM2283211, GSM2283212, GSM2283213, GSM2283214, GSM2283215, GSM2464911, GSM2464917, GSM2464919, GSM2464931
Cell/Tissue List

HeLa, HEK293T, LCLs, MM6, Huh7, Jurkat, CD4T, endometrial, HEC-1-A
Seq Type List m6A-seq,MeRIP-seq
Transcript ID List ENST00000639760.2,ENST00000382194.6,ENST00000635273.1,ENST00000636367.1,ENST00000634781.1,ENST00000634931.1,ENST00000638139.1,ENST00000382183.6,ENST00000635590.1,ENST00000382186.6,ENST00000635739.1,ENST00000636157.1,ENST00000357248.8,ENST00000634760.1,ENST00000634989.1,ENST00000324954.10,ENST00000382203.5,ENST00000302401.8,ENST00000349721.8,ENST00000417599.6,ENST00000382185.6,ENST00000450198.6
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000639760.2ENSG00000080503.24SMARCA2protein_codingcds-6
ENST00000382194.6ENSG00000080503.24SMARCA2protein_codingintron-32
ENST00000635273.1ENSG00000080503.24SMARCA2processed_transcriptintron-5
ENST00000636367.1ENSG00000080503.24SMARCA2nonsense_mediated_decayintron-9
ENST00000634781.1ENSG00000080503.24SMARCA2protein_codingintron-6
ENST00000634931.1ENSG00000080503.24SMARCA2protein_codingintron-7
ENST00000638139.1ENSG00000080503.24SMARCA2processed_transcriptintron-14
ENST00000382183.6ENSG00000080503.24SMARCA2protein_codingintron-6
ENST00000635590.1ENSG00000080503.24SMARCA2nonsense_mediated_decayintron-8
ENST00000382186.6ENSG00000080503.24SMARCA2protein_codingintron-8
ENST00000635739.1ENSG00000080503.24SMARCA2processed_transcriptintron-25
ENST00000636157.1ENSG00000080503.24SMARCA2processed_transcriptintron-16
ENST00000357248.8ENSG00000080503.24SMARCA2protein_codingintron-32
ENST00000634760.1ENSG00000080503.24SMARCA2nonsense_mediated_decayintron-32
ENST00000634989.1ENSG00000080503.24SMARCA2nonsense_mediated_decayintron-8
ENST00000324954.10ENSG00000080503.24SMARCA2protein_codingintron-6
ENST00000382203.5ENSG00000080503.24SMARCA2protein_codingintron-33
ENST00000302401.8ENSG00000080503.24SMARCA2protein_codingintron-7
ENST00000349721.8ENSG00000080503.24SMARCA2protein_codingintron-33
ENST00000417599.6ENSG00000080503.24SMARCA2protein_codingintron-7
ENST00000382185.6ENSG00000080503.24SMARCA2protein_codingintron-7
ENST00000450198.6ENSG00000080503.24SMARCA2protein_codingintron-32
Conserved Sites rheMac8:m6A_site_22128
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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