| mod ID | m6A_site_815430 | mod Site | chr9:5467979-5467980:+ | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
TGGGATGCAGGCAATGTGGGACTTAAAAGGCCCAAGCACTG |
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| Motif Score | 4.06504166666667 | |||||||||||||||
| RNA Structure Motif |
...........((((.(((...))))))).. |
MFE | -5.40 | |||||||||||||
| Support Dataset Num | 10 | Support sub-Dataset Num | 29 | |||||||||||||
| Support Dataset List | ||||||||||||||||
| Support sub-Dataset List |
GSM3582046, GSM3582047, GSM3582052, GSM3582053, GSM1339405, GSM1339439, GSM1594131, GSM1723347, GSM1723349, GSM1723351, GSM1828594, GSM2203059, GSM2203060, GSM2283214, GSM2283215, GSM2332975, GSM2332977, GSM2460350, GSM2460354, GSM2460356, GSM2460358, GSM2754220, GSM2754222, GSM2754224, GSM2754235, GSM2754240, GSM2754246, GSM2754248, GSM2464911 |
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| Cell/Tissue List |
HeLa, A549, fibroblasts, GM12878, LCLs, CD8T, Huh7, CD4T, GSC-11, iSLK, MSC, TIME, endometrial |
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| Seq Type List | MeRIP-seq,m6A-seq,m6A-CLIP/IP | |||||||||||||||
| Transcript ID List | ENST00000381573.8,ENST00000381577.4 | |||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | panTro5:m6A_site_63415 | |||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||
| writer Num | 0 | Writer Name List | na | |||||||||||||
| Writer Catalysis Detail | na | |||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
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School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1