| mod ID | m6A_site_82153 | mod Site | chr1:226407837-226407838:- | |||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
CAGCGAGAGCATCCCCAAGGACTCGCTCCGGATGGCCATCA |
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| Motif Score | 4.06504166666667 | |||||||||||||||||||||||||
| RNA Structure Motif |
.((((.(((....)))...))))........ |
MFE | -7.00 | |||||||||||||||||||||||
| Support Dataset Num | 13 | Support sub-Dataset Num | 40 | |||||||||||||||||||||||
| Support Dataset List | ||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM2739502, GSM2739503, GSM2739535, GSM2991399, GSM2991403, GSM2987447, GSM2987449, GSM3083810, GSM3582054, GSM908331, GSM1166139, GSM1166143, GSM2283210, GSM2283215, GSM2324292, GSM2324298, GSM2324308, GSM2324310, GSM2332975, GSM2332990, GSM2754211, GSM2754213, GSM2754214, GSM2754216, GSM2754220, GSM2754235, GSM2754237, GSM2754238, GSM2754244, GSM2754246, GSM2464905, GSM2464907, GSM2464909, GSM2464911, GSM2464913, GSM2464915, GSM2464919, GSM2464921, GSM2564019, GSM2564022 |
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| Cell/Tissue List |
HeLa, HepG2, A549, U2OS, Jurkat, CD4T, peripheral-blood, GSC-11, HEK293T, iSLK, MSC, TIME, endometrial, NB4, MM6 |
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| Seq Type List | m6A-seq,MeRIP-seq | |||||||||||||||||||||||||
| Transcript ID List | ENST00000366790.3,ENST00000629232.1,ENST00000366794.10,ENST00000366792.3 | |||||||||||||||||||||||||
| Transcript Detail |
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| Conserved Sites | mm10:m6A_site_40022 | |||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | |||||||||||||||||||||||
| snoRNA Guide Detail | na | |||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | |||||||||||||||||||||||
| Writer Catalysis Detail | na | |||||||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1