RMBase v3.0: Decipher the Landscape, Mechanism and Function of RNA Modifications by Integrating Multi-dimensional High-throughput Sequencing Data.

Details of RNA Modification Site of hg38

mod ID

m6A_site_829064

mod Site

chr9:95506545-95506546:-

mod Type

m6A

Sequence

CTGAGAGCGAAGTTTCAGAGACTCTTATTTAAACTGGGTTG

Motif Score

3.31938095238095

RNA Structure Motif

.....(((((.(((........)))))))).

MFE

-1.80

Support Dataset Num

Support sub-Dataset Num

Support Dataset List

GSE102493, GSE120229, GSE125803, GSE29714, GSE46705, GSE52600, GSE55572, GSE85724, GSE87515, GSE90914, GSE93676

Support sub-Dataset List

GSM2739503, GSM2739506, GSM2991403, GSM3396437, GSM3396438, GSM3582046, GSM3582047, GSM3582048, GSM3582049, GSM3582052, GSM3582054, GSM928399, GSM928401, GSM1135021, GSM1135032, GSM1135033, GSM1272360, GSM1272366, GSM1272368, GSM1339395, GSM1339427, GSM1339439, GSM2283210, GSM2283211, GSM2332975, GSM2332977, GSM2332978, GSM2417477, GSM2417478, GSM2417479, GSM2460352, GSM2460360, GSM2754226

Cell/Tissue List

HeLa, HEK293T, A549, H1B, H1A, hESCs, Jurkat, GSC-11, HEK293A-TOA, MSC, TREX

Seq Type List

m6A-seq,MeRIP-seq

Transcript ID List

ENST00000375290.6,ENST00000418258.5,ENST00000551630.1,ENST00000430669.6,ENST00000331920.10,ENST00000429896.6,ENST00000375274.6,ENST00000421141.5,ENST00000546820.5,ENST00000468211.6,ENST00000547672.5,ENST00000551425.1,ENST00000437951.5,ENST00000550914.6,ENST00000551623.1,ENST00000551845.5,ENST00000553011.5,ENST00000548945.6,ENST00000548420.1

Transcript Detail

Transcript ID	Gene ID	Gene Name	Gene Type	Region
ENST00000375290.6	ENSG00000185920.15	PTCH1	nonsense_mediated_decay	cds-1
ENST00000418258.5	ENSG00000185920.15	PTCH1	protein_coding	utr5-2
ENST00000551630.1	ENSG00000185920.15	PTCH1	protein_coding	utr5-1
ENST00000430669.6	ENSG00000185920.15	PTCH1	protein_coding	cds-2
ENST00000331920.10	ENSG00000185920.15	PTCH1	protein_coding	cds-2
ENST00000429896.6	ENSG00000185920.15	PTCH1	protein_coding	utr5-2
ENST00000375274.6	ENSG00000185920.15	PTCH1	protein_coding	cds-2
ENST00000421141.5	ENSG00000185920.15	PTCH1	protein_coding	utr5-2
ENST00000546820.5	ENSG00000185920.15	PTCH1	protein_coding	utr5-2
ENST00000468211.6	ENSG00000185920.15	PTCH1	protein_coding	cds-2
ENST00000547672.5	ENSG00000185920.15	PTCH1	protein_coding	utr5-2
ENST00000551425.1	ENSG00000185920.15	PTCH1	processed_transcript	intron-1
ENST00000437951.5	ENSG00000185920.15	PTCH1	protein_coding	cds-2
ENST00000550914.6	ENSG00000185920.15	PTCH1	nonsense_mediated_decay	utr5-1
ENST00000551623.1	ENSG00000185920.15	PTCH1	nonsense_mediated_decay	intron-1
ENST00000551845.5	ENSG00000185920.15	PTCH1	protein_coding	utr5-2
ENST00000553011.5	ENSG00000185920.15	PTCH1	protein_coding	utr5-2
ENST00000548945.6	ENSG00000185920.15	PTCH1	processed_transcript	exon-1
ENST00000548420.1	ENSG00000185920.15	PTCH1	protein_coding	utr5-1

Conserved Sites

mm10:m6A_site_165651;panTro5:m6A_site_64415;rheMac8:m6A_site_22481;rn6:m6A_site_41648

snoRNA Num

snoRNA Guide Site

snoRNA Guide Detail

writer Num

Writer Name List

Writer Catalysis Detail

PubMed ID

29507755, 31597913, 22608085, 24284625, 25456834, 24981863, 27371828, 28344040, 28525753, 29109479

Discription & Help

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

♥ Click the "Show Detail" button to show detailed list and click again to hide it.