Details of RNA Modification Site of hg38
mod ID m6A_site_832397 mod Site chr9:107487114-107487115:-
mod Type m6A Sequence GATCGTGGCCCCGGAAAAGGACCGCCACCCACACTTGTGAT
Motif Score 3.62240476190476
RNA Structure Motif ((((.((......))...)))).........
 MFE -6.70
Support Dataset Num 8 Support sub-Dataset Num 22
Support Dataset List
Support sub-Dataset List

GSM2739502, GSM2739506, GSM2739522, GSM2739534, GSM2739535, GSM2991403, GSM3396438, GSM1135020, GSM1135021, GSM1135032, GSM1135033, GSM1339403, GSM2010454, GSM2203047, GSM2203059, GSM2460348, GSM2460352, GSM2754216, GSM2754220, GSM2754244, GSM2464919, GSM2464931
Cell/Tissue List

HeLa, HEK293T, fibroblasts, MM6, Huh7, iSLK, MSC, endometrial, HEC-1-A
Seq Type List m6A-seq,MeRIP-seq
Transcript ID List ENST00000610832.1,ENST00000497048.5,ENST00000493306.1,ENST00000374672.5
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000610832.1ENSG00000136826.15KLF4protein_codingcds-3
ENST00000497048.5ENSG00000136826.15KLF4retained_intronexon-2
ENST00000493306.1ENSG00000136826.15KLF4retained_intronexon-3
ENST00000374672.5ENSG00000136826.15KLF4protein_codingcds-4
Conserved Sites mm10:m6A_site_417559;rn6:m6A_site_77991
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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