| mod ID | m6A_site_835768 | mod Site | chr9:117715700-117715701:+ | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
GAACAAGTGATGTTTGATGGACCTCTGAATCTCTTTAGGGA |
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| Motif Score | 3.62240476190476 | ||||||||||||||||||||||||||||||
| RNA Structure Motif |
((.(((....((......))...))).)).. |
MFE | -0.80 | ||||||||||||||||||||||||||||
| Support Dataset Num | 5 | Support sub-Dataset Num | 15 | ||||||||||||||||||||||||||||
| Support Dataset List | |||||||||||||||||||||||||||||||
| Support sub-Dataset List |
GSM1166139, GSM1166142, GSM1594131, GSM2324298, GSM2460352, GSM2460354, GSM2460356, GSM2460358, GSM2460360, GSM2754222, GSM2754224, GSM2754244, GSM2754246, GSM2754248, GSM2464919 |
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| Cell/Tissue List |
U2OS, GM12878, peripheral-blood, MSC, TIME, TREX, endometrial |
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| Seq Type List | MeRIP-seq,m6A-seq | ||||||||||||||||||||||||||||||
| Transcript ID List | ENST00000645071.1,ENST00000394487.5,ENST00000355622.8,ENST00000646089.1,ENST00000642985.1 | ||||||||||||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | mm10:m6A_site_420336 | ||||||||||||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||||||||||||||||||||||
| snoRNA Guide Detail | na | ||||||||||||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | ||||||||||||||||||||||||||||
| Writer Catalysis Detail | na | ||||||||||||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
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School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1