Details of RNA Modification Site of hg38
mod ID m6A_site_835780 mod Site chr9:117716337-117716338:+
mod Type m6A Sequence TTCCATTGAAAAATAAATGGACAAAGAAAATGTGCATATAC
Motif Score 3.64304761904762
RNA Structure Motif ............((.(((.......))).))
 MFE -1.90
Support Dataset Num 2 Support sub-Dataset Num 5
Support Dataset List GSE55572, GSE93676
Support sub-Dataset List

GSM1339403, GSM2460352, GSM2460354, GSM2460356, GSM2460358
Cell/Tissue List fibroblasts, MSC, TIME
Seq Type List m6A-seq,MeRIP-seq
Transcript ID List ENST00000642985.1,ENST00000646089.1,ENST00000355622.8,ENST00000645071.1,rmsk_2862015
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000642985.1ENSG00000285082.1AL160272.2nonsense_mediated_decayintron-2
ENST00000646089.1ENSG00000285082.1AL160272.2protein_codingintron-1
ENST00000355622.8ENSG00000136869.15TLR4protein_codingutr3-3
ENST00000645071.1ENSG00000136869.15TLR4protein_codingutr3-3
rmsk_2862015rmsk_2862015L1MA10L1exon
Conserved Sites na
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 0 Writer Name List na
Writer Catalysis Detail na
PubMed ID 24981863, 29109479

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

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