| mod ID | m6A_site_836397 | mod Site | chr9:120902830-120902831:- | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mod Type | m6A | Sequence |
AGGCAAGATGTGCACTCTGGACTCAAGAAACTCTTAGTTCA |
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| Motif Score | 4.06504166666667 | ||||||||||||||||||||
| RNA Structure Motif |
.((.((.((...)).))))............ |
MFE | -2.00 | ||||||||||||||||||
| Support Dataset Num | 17 | Support sub-Dataset Num | 41 | ||||||||||||||||||
| Support Dataset List | |||||||||||||||||||||
| Support sub-Dataset List |
GSM2739522, GSM2739523, GSM2884195, GSM2884197, GSM2884199, GSM3582046, GSM3582047, GSM3582052, GSM3582053, GSM1166143, GSM1166144, GSM1272366, GSM1272368, GSM1339395, GSM1339405, GSM1594131, GSM1723347, GSM1723349, GSM1723351, GSM1828594, GSM2010454, GSM2010456, GSM2203060, GSM2283214, GSM2283215, GSM2324308, GSM2417477, GSM2417479, GSM2460352, GSM2460354, GSM2460356, GSM2460358, GSM2460360, GSM2754220, GSM2754222, GSM2754224, GSM2754226, GSM2754246, GSM2754248, GSM2464911, GSM2564019 |
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| Cell/Tissue List |
HeLa, CD34, A549, U2OS, H1A, H1B, hESCs, fibroblasts, GM12878, LCLs, CD8T, MM6, Huh7, CD4T, peripheral-blood, HEK293A-TOA, MSC, TIME, TREX, endometrial, NB4 |
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| Seq Type List | m6A-seq,MeRIP-seq,m6A-CLIP/IP | ||||||||||||||||||||
| Transcript ID List | ENST00000546084.5,ENST00000373887.8,ENST00000540010.1 | ||||||||||||||||||||
| Transcript Detail |
|
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| Conserved Sites | panTro5:m6A_site_64947 | ||||||||||||||||||||
| snoRNA Num | 0 | snoRNA Guide Site | na | ||||||||||||||||||
| snoRNA Guide Detail | na | ||||||||||||||||||||
| writer Num | 0 | Writer Name List | na | ||||||||||||||||||
| Writer Catalysis Detail | na | ||||||||||||||||||||
| PubMed ID |
♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.
♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.
♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.
♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.
♥ Click the "Show Detail" button to show detailed list and click again to hide it.
© 2023, Qu Lab.
School of Life Science,
Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1