Details of RNA Modification Site of hg38
mod ID m6A_site_838608 mod Site chr9:125241156-125241157:-
mod Type m6A Sequence GTGCTACGGCCTGTGGCTGGACTGCCTGCTGCTGCCCAACT
Motif Score 4.06504166666667
RNA Structure Motif ..(((..(((((.((....)).))))).)))
 MFE -11.80
Support Dataset Num 6 Support sub-Dataset Num 7
Support Dataset List
Support sub-Dataset List

GSM2739502, GSM2739503, GSM2987447, GSM908331, GSM2010456, GSM2324298, GSM2602070
Cell/Tissue List

HeLa, HepG2, MM6, peripheral-blood, AML
Seq Type List m6A-seq,miCLIP
Transcript ID List ENST00000324460.7
Transcript Detail

Transcript ID Gene ID Gene Name Gene Type Region
ENST00000324460.7ENSG00000044574.8HSPA5protein_codingutr5-1
Conserved Sites mm10:m6A_site_334158
snoRNA Num 0 snoRNA Guide Site na
snoRNA Guide Detail na
writer Num 3 Writer Name List METTL14,RBM15,WTAP
Writer Catalysis Detail

Writer Name Writer ID Writer Binding Site Source
METTL14METTL14:CH9026chr9:125241141-125241162SBDH143-1707
RBM15RBM15:CH80563chr9:125241131-125241188SBDH828-21875
WTAPWTAP:CH11924chr9:125241141-125241164SBDH147-728
PubMed ID

♥ There is a specific explanation when the mouse hover the logo in the upper right corner of each entry.

♥ The "modID" is unique ID among all modules and can be used to retrieve in all files of the RMBase v3.0 for more information.

♥ The "Motif score" is alignment score to evaluate the accuracy of identified motif regions of m6A. The higher of motif score means a more accurate motif and a more reliable modification site. The range is from 0 to 5.

♥ In "Transcript Detail", the "Gene Type" is gene biotypes including protein-coding genes (mRNAs), tRNAs, rRNAs, Mt-tRNAs, lincRNAs, pseudogenes etc.; While the "Region" is gene features including CDS, 3′-UTR, 5′-UTR, intron, exon and intergenic.

♥ Click the "Show Detail" button to show detailed list and click again to hide it.

© 2023, Qu Lab. School of Life Science, Sun Yat-sen University, China.
Guangdong ICP 2022122093 -1